Content ID:
Field:


  • About Smithsonian
  • Email Updates
  • Member Services
  • Shop
  • Archive
Smithsonian.com
  • Smithsonian Institution
  • Smithsonian Channel
  • goSmithsonian
  • Air & Space magazine
  • Home
  • History & Archaeology
  • People & Places
  • Science & Nature
  • Arts & Culture
  • Travel
  • Photos & Videos
  • Games & Puzzles
  • Subscribe
Plant sample from Plummers Island "Now it's off to the races," botanist Dave Erickson says of a project to barcode 250 species of plant life on Plummers Island.

Stephen Voss

  • Arts & Culture

Cracking the DNA Code

On a small island near Washington, D.C., Smithsonian researchers have found a genetic code that could revolutionize botany

  • By Megan Gambino
  • Smithsonian magazine, August 2009

Article Tools

  • Font
  • Share/Save/Bookmark Share
  • Email
  • Print
  • Digg Digg
  • Comments
  • StumbleUpon StumbleUpon
  • RSS
  • Reddit Reddit

    Related Topics

    Botany

    DNA

    Tropics

    Photo Gallery

    Botanists John Kress and Dave Erickson

    Cracking the DNA Code

    Explore more photos from the story

    More from Smithsonian.com
    • The Hidden World of Ants

    The expedition team didn't expect the water to be so high or the final stretch of the planned route across a narrow channel impassable. The scientists have to scramble across a crude bridge of downed branches to get to the island's southeastern tip and begin collecting specimens.

    "Essentially, we're standing in a tropical forest," says botanist John Kress. In the muggy heat, he's rolled up the sleeves of his white dress shirt. He grabs a small tree branch and brings its burgundy flowers into closer view. "I feel like I'm in Costa Rica," he says.

    A high-pitched whistle emerges from the forest. Kress' colleague, botanist Dave Erickson, jokingly asks if it's a howler monkey, which lives in Central and South America.

    "It's whatever you want it to be," says Kress.

    Plummers Island, a 12-acre, teardrop-shaped landmass in the Potomac River—just over ten miles from Kress' office at the Smithsonian National Museum of Natural History—is about as unspoiled, and unlikely, a landscape as can be found inside the Washington, D.C. Beltway. Owned by the National Park Service since 1961, Plummers is also the most thoroughly studied island in North America. And, thanks to Kress and his colleagues, it is the first site in the world to have all 250 of its plant species barcoded.

    DNA barcoding, the brainchild of Canadian geneticist Paul Hebert, is modeled after the Universal Product Code (UPC) found on consumer packaging. Each UPC has a number designating the manufacturer (say, a soft drink company) and a specific product identifier (diet, caffeine-free, etc.). Hebert found a segment of animal DNA common to all species (the manufacturing code) and varied enough to distinguish among animal species (the product identifier). But researchers have had a harder time finding a standardized DNA segment for plant life.

    Starting five years ago, Kress' research team collected samples of every plant species on Plummers Island. Then, in a botany lab, Erickson and others determined each one's DNA sequence. From there, they homed in on three genetic zones—two genes and an "intergenic spacer" between genes—that collectively could distinguish the plants. Along with other botanists, Kress and Erickson are in the midst of a formal process to get the markers approved as the standard plant barcode. Kress is hoping for official acceptance within a year from the Consortium for the Barcode of Life, a project established in 2004 to compile a reference library of codes.

    Until recently, taxonomists needed a plant's flowers or fruits to classify it, meaning they had to collect samples at specific times of the year. But with DNA barcoding, they can use any part of the plant—seeds, bark, roots or leaves—to identify it.

    "But the biggest benefit is that you won't have to be an expert," says Kress. In the not-so-distant future, even schoolchildren will be able to identify plants with hand-held DNA sequencers. They could then upload the barcodes via smartphones to an online encyclopedia with basics about the species, botanical art and anecdotal information. The Food and Drug Administration could use barcoding to test herbal supplements; U.S. Customs and Border Protection could use it to identify suspicious imports.

    Erickson has also found plant DNA in the ground-up guts of ten different orders of insects from Plummers Island. He wants to better understand which insects are specialists, meaning they eat certain plant species, and which are generalists, which eat just about anything.

    "I'm a find 'em and grind 'em kind of guy," says Erickson, turning a common botanical slur into a boast. Kress, a vegetarian, rolls his eyes in feigned disgust.

    "You're definitely not a specialist," Erickson teases, dropping a bright green caterpillar into a tiny specimen bag. "You're a generalist. I've seen you eat."

    The expedition team didn't expect the water to be so high or the final stretch of the planned route across a narrow channel impassable. The scientists have to scramble across a crude bridge of downed branches to get to the island's southeastern tip and begin collecting specimens.

    "Essentially, we're standing in a tropical forest," says botanist John Kress. In the muggy heat, he's rolled up the sleeves of his white dress shirt. He grabs a small tree branch and brings its burgundy flowers into closer view. "I feel like I'm in Costa Rica," he says.

    A high-pitched whistle emerges from the forest. Kress' colleague, botanist Dave Erickson, jokingly asks if it's a howler monkey, which lives in Central and South America.

    "It's whatever you want it to be," says Kress.

    Plummers Island, a 12-acre, teardrop-shaped landmass in the Potomac River—just over ten miles from Kress' office at the Smithsonian National Museum of Natural History—is about as unspoiled, and unlikely, a landscape as can be found inside the Washington, D.C. Beltway. Owned by the National Park Service since 1961, Plummers is also the most thoroughly studied island in North America. And, thanks to Kress and his colleagues, it is the first site in the world to have all 250 of its plant species barcoded.

    DNA barcoding, the brainchild of Canadian geneticist Paul Hebert, is modeled after the Universal Product Code (UPC) found on consumer packaging. Each UPC has a number designating the manufacturer (say, a soft drink company) and a specific product identifier (diet, caffeine-free, etc.). Hebert found a segment of animal DNA common to all species (the manufacturing code) and varied enough to distinguish among animal species (the product identifier). But researchers have had a harder time finding a standardized DNA segment for plant life.

    Starting five years ago, Kress' research team collected samples of every plant species on Plummers Island. Then, in a botany lab, Erickson and others determined each one's DNA sequence. From there, they homed in on three genetic zones—two genes and an "intergenic spacer" between genes—that collectively could distinguish the plants. Along with other botanists, Kress and Erickson are in the midst of a formal process to get the markers approved as the standard plant barcode. Kress is hoping for official acceptance within a year from the Consortium for the Barcode of Life, a project established in 2004 to compile a reference library of codes.

    Until recently, taxonomists needed a plant's flowers or fruits to classify it, meaning they had to collect samples at specific times of the year. But with DNA barcoding, they can use any part of the plant—seeds, bark, roots or leaves—to identify it.

    "But the biggest benefit is that you won't have to be an expert," says Kress. In the not-so-distant future, even schoolchildren will be able to identify plants with hand-held DNA sequencers. They could then upload the barcodes via smartphones to an online encyclopedia with basics about the species, botanical art and anecdotal information. The Food and Drug Administration could use barcoding to test herbal supplements; U.S. Customs and Border Protection could use it to identify suspicious imports.

    Erickson has also found plant DNA in the ground-up guts of ten different orders of insects from Plummers Island. He wants to better understand which insects are specialists, meaning they eat certain plant species, and which are generalists, which eat just about anything.

    "I'm a find 'em and grind 'em kind of guy," says Erickson, turning a common botanical slur into a boast. Kress, a vegetarian, rolls his eyes in feigned disgust.

    "You're definitely not a specialist," Erickson teases, dropping a bright green caterpillar into a tiny specimen bag. "You're a generalist. I've seen you eat."


    Related topics: Botany DNA Tropics

     
    Comments

    Post a Comment


    Name: (required)

    Email: (required)

    Comment:



    Advertisement


    Most Popular Video

    • Newest
    • Most Viewed
    The Quirky Ways of the Postal Service

    The Quirky Ways of the Postal Service

    (05:09)

    Farewell, Tai Shan

    (3:17)

    Poaching the Venus Flytrap

    (02:33)

    Remembering the Horrors of Auschwitz

    (5:47)

    Hiding in a Coconut

    (1:14)

    Remembering the Horrors of Auschwitz

    (5:47)

    Poaching the Venus Flytrap

    (02:33)

    Renoir Through the Years

    Most Popular

    • Viewed
    • Emailed
    • Topic
    1. Henrietta Lacks’ ‘Immortal’ Cells
    2. Easter Island
    3. Myths of the American Revolution
    4. Family Ties
    5. Tattoos
    6. Uncovering Secrets of the Sphinx
    7. Volcanic Lightning
    8. Top 13 U.S. Winter Olympians
    9. 28 Places to See Before You Die—the Taj Mahal, Grand Canyon and More
    10. Ten Plants That Put Meat on Their Plates
    1. 28 Places to See Before You Die—the Taj Mahal, Grand Canyon and More
    2. Students of the Game
    3. Henrietta Lacks’ ‘Immortal’ Cells
    4. Curse of the Devil's Dogs
    1. Culture and Lifestyle
    2. United States
    3. Cultural Institutions and Parks
    4. Smithsonian Institution
    5. Science and Technology
    6. Nature and the Environment
    7. History
    8. Museums
    9. Wildlife
    10. Washington

    - - - Advertisements - - -


    Join Us

    Facebook

    Facebook

    Become a fan of Smithsonian magazine's official Facebook page!

    Twitter

    Follow Smithsonian magazine on Twitter

    In The Magazine

    February 2010 Issue Cover

    February 2010

    • Uncovering Secrets of the Sphinx
    • Picture of Prosperity
    • The Venus Flytrap's Lethal Allure
    • Can Auschwitz Be Saved?
    • Renoir Rebels Again

    View Table of Contents »

    Smithsonian magazine presents

    6th Annual Smithsonian Photo Contest Winners

    Out of more than 17,000 entries, Smithsonian and its readers select the year's best

    • Smithsonian Store
    • Smithsonian Journeys

    Ace of Cakes - Signed Copy

    Item No. 10375

    Treasures of Angkor Wat and Vietnam

    Expert local historians enhance your journey to Thailand, Cambodia, and Vietnam (Multiple departures in 2010)



    View full archiveRecent Issues

    • February 2010 Issue Cover
      Feb 2010

    • January 2010 Issue Cover
      Jan 2010

    • December 2009 Issue Cover
      Dec 2009

    Newsletter

    Sign up for regular email updates from Smithsonian magazine, including free newsletters, special offers and current news updates.

    Subscribe Now

    About Us

    Smithsonian.com expands on Smithsonian magazine's in-depth coverage of history, science, nature, the arts, travel, world culture and technology. Join us regularly as we take a dynamic and interactive approach to exploring modern and historic perspectives on the arts, sciences, nature, world culture and travel, including videos, blogs and a reader forum.

    Explore our Brands

    • goSmithsonian.com
    • Smithsonian Air & Space Museum
    • Smithsonian Institution
    • Smithsonian Catalogue
    • Smithsonian Journeys
    • Smithsonian Channel
    • Site Map
    • Privacy Policy
    • Copyright
    • About Smithsonian
    • Contact Us
    • Advertising
    • Reader Panel
    • Subscribe
    • RSS
    • Topics

    Smithsonian Institution

    Produced by Clickability